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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2058126_2058289_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2058126 - 2058289
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
CTCCCCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
CAGCTCTCAGCC
Flanking Amino Acid:
VSWKRPFTLVITFFTLLSVL
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
71.9
0.49
0.9
64.9
30.7
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
44.7
-0.4
1.7
48.91
41

Associated Gene:

Gene:
FAM189B
Ensembl Gene ID:
ENSAPLG00000011814
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012299
2054074 - 2059235
5162
ENSAPLT00000047474
2054074 - 2059235
5162