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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2061759_2061891_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2061759 - 2061891
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
GACTCCTGAGCC
Flanking Amino Acid:
AVLGIIMLKKIHSLYRRTGA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
53.3
0.08
1.7
61.71
43

Associated Gene:

Gene:
SCAMP3
Ensembl Gene ID:
ENSAPLG00000028001
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038737
2060222 - 2064074
3853
ENSAPLT00000037553
2060222 - 2063827
3606