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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2061759_2062090_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2061759 - 2062090
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
GACTCCTGAGCC
Flanking Amino Acid:
QAIGIPNWGFRFTLCTAGRV
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
53.3
0.08
1.7
61.71
43

Associated Gene:

Gene:
SCAMP3
Ensembl Gene ID:
ENSAPLG00000028001
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022101
2060222 - 2063827
3606