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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2062193_2062583_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2062193 - 2062583
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
TCTGGCCTAACC
Flanking Amino Acid:
CWYRPMYKAFRSDSSFNFFV
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
83.1
28.7
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
83.3
0.75
0.7
76.2
32.4
Minor 5ss
40.9
-1
2.7
53.5
43.9
Minor BPS
49.4
-0
2.2
66.79
45

Associated Gene:

Gene:
SCAMP3
Ensembl Gene ID:
ENSAPLG00000028001
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038737
2060222 - 2064074
3853
ENSAPLT00000037553
2060222 - 2063827
3606
ENSAPLT00000022101
2060222 - 2063827
3606