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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2062744_2062931_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2062744 - 2062931
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCCTCTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GGCGCCTGACCG
Flanking Amino Acid:
TVSTMYYLWMASTIALFLNF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
78.8
0.65
0.7
76.7
25.3
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
44.7
-0.5
1.9
45.56
46.3

Associated Gene:

Gene:
SCAMP3
Ensembl Gene ID:
ENSAPLG00000028001
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022101
2060222 - 2063827
3606
ENSAPLT00000038737
2060222 - 2064074
3853
ENSAPLT00000037553
2060222 - 2063827
3606