Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2063061_2063152_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2063061 - 2063152

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TTTTGCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CGCCTCTCACCT

Flanking Amino Acid:

LQNAALGSGATRLNNWPPLP

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

63.4

35.3

Major BPS

72.7

0.56

30.1

Major PPT

86.9

0.83

0.7

81.5

30.6

Minor 5ss

30.7

-2.2

3.1

41.6

38.8

Minor BPS

45.3

-0.2

1.8

57.64

45.1

Associated Gene:

Gene:

SCAMP3

Ensembl Gene ID:

ENSAPLG00000028001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037553

2060222 - 2063827

3606

ENSAPLT00000022101

2060222 - 2063827

3606

ENSAPLT00000038737

2060222 - 2064074

3853