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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2066472_2066906_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2066472 - 2066906
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
YVRENCKPLRRYLTSEAEDH
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.2
49
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
29.7
-2.3
3.2
30.3
42.8
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069