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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2066998_2067230_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2066998 - 2067230
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
CTTACTCTGACA
Flanking Amino Acid:
PIPSRMIRKTRKQKYFYHGR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
73
0.52
1
68.5
37.3
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
54.1
0.12
1.7
67.75
38.6

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069