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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2067311_2067541_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2067311 - 2067541
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTCCCCTTTATG
Flanking Amino Acid:
EYYVGFTLFQTHDNREHLAM
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.6
0.67
0.8
77.7
31
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
52.9
-0
1.8
56.58
45

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069