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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2067625_2067902_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2067625 - 2067902
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATA
Flanking Amino Acid:
RHYRAPEVILELGWSQPCDV
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
40.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.4
0.66
0.8
77.2
36.8
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
61.9
0.37
1.5
70.41
36.7

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069