Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2068033_2068396_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2068033 - 2068396

Intron Length:

364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGCAA

5'SS Class:

major

3'SS Sequence:

CTCCCTCACAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGGAA

U12 Branch Point Sequence:

TTCTCCCTCACA

Flanking Amino Acid:

DYELTYNLEKKRDERSVKST

Intron Amino Acid Position:

385

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.6

1.2

65.8

41.7

Major BPS

62.2

0.3

1.4

63.4

44.3

Major PPT

58.5

0.19

29.3

Minor 5ss

35.6

-1.6

3.3

48.3

Minor BPS

59.1

0.28

2.1

75.88

41.5

Associated Gene:

Gene:

CLK2

Ensembl Gene ID:

ENSAPLG00000012185

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012732

2065805 - 2072873

7069