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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2069130_2069365_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2069130 - 2069365
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
CTGTCCCGAATC
Flanking Amino Acid:
KINEKDPENKNLCVRMFDWF
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.9
29.7
Major BPS
66.3
0.41
1
61
37.5
Major PPT
90.4
0.91
0.6
88.8
20.5
Minor 5ss
29.2
-2.4
3.1
32.8
35.7
Minor BPS
51.6
0.03
1.8
63.83
42

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069