About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2069870_2070216_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2069870 - 2070216
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTACAGCCA
5'SS Class:
weak_major
3'SS Sequence:
CTCTCCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CACTCTCTCATG
Flanking Amino Acid:
YRVGDWLQERYEIISTLGEG
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.2
49.7
40.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.3
0.61
0.7
68.8
31.6
Minor 5ss
31.7
-2.1
3.6
43
44.4
Minor BPS
42.7
-0.7
2
44.2
42.5

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069