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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2072299_2072499_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2072299 - 2072499
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTAAT
U12 Branch Point Sequence:
GTGTTCGTAATC
Flanking Amino Acid:
REDSYHVRSRSYDDHSADRR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74
38.4
Major BPS
71.8
0.54
1.2
71.9
41
Major PPT
74.6
0.55
0.8
65.7
36
Minor 5ss
28.1
-2.5
2.7
31.4
42.8
Minor BPS
54.5
0.12
2
66.11
40.2

Associated Gene:

Gene:
CLK2
Ensembl Gene ID:
ENSAPLG00000012185
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012732
2065805 - 2072873
7069