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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2079522_2081603_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2079522 - 2081603
Intron Length:
2082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
TGCCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCCT
U12 Branch Point Sequence:
TGCTCCCTGCCT
Flanking Amino Acid:
LDHPPLQRLQVLLGPHHAAP
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
32.6
-1
4.2
67.6
40.6
Major PPT
74.7
0.56
0.8
69.1
31.4
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
42.2
-0.5
3.6
72.81
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012747
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013268
2058321 - 2086285
27965