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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2083576_2083663_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2083576 - 2083663
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
CCTCACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGCTCCTCACCC
Flanking Amino Acid:
LGELSEPLKEEIINFNCRNL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
68.7
0.42
0.8
60.9
29
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
55.9
0.16
1.9
67.35
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012747
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013268
2058321 - 2086285
27965