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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2090402_2090487_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2090402 - 2090487
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CAGCCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TGCCCCCTAACC
Flanking Amino Acid:
ALAVGWCIELFQAFFLVADD
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
75.2
0.57
0.9
68.7
36.8
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
60.9
0.32
1.7
70
40.9

Associated Gene:

Gene:
FDPS
Ensembl Gene ID:
ENSAPLG00000018863
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030456
2089915 - 2092379
2465