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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2091123_2091392_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2091123 - 2091392
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGAA
5'SS Class:
major
3'SS Sequence:
TCCTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACTGAATG
Flanking Amino Acid:
QVDLNRFSEQRYKAIVKYKT
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.7
32.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.6
0.62
0.7
72
26.3
Minor 5ss
22.4
-3.2
3.3
28
44
Minor BPS
51.5
-0
1.7
58.92
42.7

Associated Gene:

Gene:
FDPS
Ensembl Gene ID:
ENSAPLG00000018863
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030456
2089915 - 2092379
2465