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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2091466_2091604_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2091466 - 2091604
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTCTCTCTATTA
Flanking Amino Acid:
YLPVAAAMYMTGIDSKEEHD
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
77.8
0.62
0.8
78.5
28.7
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
51.1
0.03
1.9
67.36
39.9

Associated Gene:

Gene:
FDPS
Ensembl Gene ID:
ENSAPLG00000018863
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030456
2089915 - 2092379
2465