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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2091892_2092178_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2091892 - 2092178
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCCC
5'SS Class:
major
3'SS Sequence:
GGTGCCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
AAACCCCAAACT
Flanking Amino Acid:
VTPDQRQILEENYGRKEPEK
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
63.3
41.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
69.9
0.45
0.9
65.5
41
Minor 5ss
32.1
-2
3.2
43.2
43.9
Minor BPS
48.4
-0
2
67.39
42.4

Associated Gene:

Gene:
FDPS
Ensembl Gene ID:
ENSAPLG00000018863
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030456
2089915 - 2092379
2465