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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2095143_2095730_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2095143 - 2095730
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CGAGCCTCACCG
Flanking Amino Acid:
VERGDETCKEARPSPPAAGA
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
77.2
0.61
0.8
68.4
31.9
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
44
-0.5
2
44.99
46.7

Associated Gene:

Gene:
RUSC1
Ensembl Gene ID:
ENSAPLG00000021575
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018685
2093573 - 2100409
6837