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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2096954_2097053_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2096954 - 2097053
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTTTCCTTTACT
Flanking Amino Acid:
KFHAFILGLLNTKQLELWIS
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.8
0.51
0.9
73.2
36.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
80.5
1.04
1.5
93.5
34.2

Associated Gene:

Gene:
RUSC1
Ensembl Gene ID:
ENSAPLG00000021575
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018685
2093573 - 2100409
6837