About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2097101_2097420_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2097101 - 2097420
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAC
5'SS Class:
strong_major
3'SS Sequence:
TCATATCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTGCTCATATCT
Flanking Amino Acid:
LWISHLQNSPGVISVLYFPT
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.1
34.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
70.9
0.47
0.9
65.9
35.3
Minor 5ss
36.8
-1.5
3.3
49.4
47.1
Minor BPS
50.7
0.1
1.9
74.03
42.6

Associated Gene:

Gene:
RUSC1
Ensembl Gene ID:
ENSAPLG00000021575
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018685
2093573 - 2100409
6837