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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2099036_2099694_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2099036 - 2099694
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCAG
5'SS Class:
major
3'SS Sequence:
ATTTGTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
GAACCCCTGATG
Flanking Amino Acid:
RNTSNVPQTHREVRALCDHT
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
58.4
42
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
74.3
0.55
1
70
40.8
Minor 5ss
24.7
-2.9
3
29.1
43.4
Minor BPS
46.6
-0.4
1.7
47.65
39

Associated Gene:

Gene:
RUSC1
Ensembl Gene ID:
ENSAPLG00000021575
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018685
2093573 - 2100409
6837