About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2110810_2111058_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
2110810 - 2111058

Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGA|GTAAAAAAT

5'SS Class:
major

3'SS Sequence:
TTTTTTCCTCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTAACAT

U12 Branch Point Sequence:
GCCATCTTAACA

Flanking Amino Acid:
EQCEPRSVNREVPMIPRPHY

Intron Amino Acid Position:
2646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
64.6
0.34
1.1
67.7
37.3

Major BPS
71
0.52
1.1
77.7
35.3

Major PPT
92.5
0.96
0.6
85.6
29.1

Minor 5ss
35.8
-1.6
3.2
45.5
43.5

Minor BPS
63.9
0.43
1.4
64.15
42.3

Associated Gene:

Gene:
ASH1L

Ensembl Gene ID:

Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2102393 - 2152350
49958

2104173 - 2152350
48178