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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2115149_2115313_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2115149 - 2115313
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAG
Flanking Amino Acid:
NFHSFNVEKQQLCKCGFDKC
Intron Amino Acid Position:
2280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
1
78.2
28
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
66.5
0.38
1.7
73.73
38.3

Associated Gene:

Gene:
ASH1L
Ensembl Gene ID:
ENSAPLG00000013084
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019004
2102393 - 2152350
49958
ENSAPLT00000013648
2104173 - 2152350
48178