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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2115423_2116908_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2115423 - 2116908
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTATTT
Flanking Amino Acid:
SCNPNCEMQKWSVNGVYRIG
Intron Amino Acid Position:
2292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.2
0.84
0.7
82
29.2
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
56.4
0.28
2
82.33
38.9

Associated Gene:

Gene:
ASH1L
Ensembl Gene ID:
ENSAPLG00000013084
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019004
2102393 - 2152350
49958