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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2119023_2120579_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2119023 - 2120579
Intron Length:
1557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATGTATTAAAAT
Flanking Amino Acid:
DILWQWKHNQLYKKPDVPLY
Intron Amino Acid Position:
2123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
36.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.4
0.8
0.6
84.6
23.3
Minor 5ss
30.4
-2.2
3.7
46.7
48.6
Minor BPS
48.7
-0
1.9
68.34
42.5

Associated Gene:

Gene:
ASH1L
Ensembl Gene ID:
ENSAPLG00000013084
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019004
2102393 - 2152350
49958
ENSAPLT00000013648
2104173 - 2152350
48178