About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2123325_2128998_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
2123325 - 2128998

Intron Length:
5674

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGA|GTAAGTAAT

5'SS Class:
major

3'SS Sequence:
CTGTTGTCCACAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTGAT

U12 Branch Point Sequence:
GTTGCTTTCATC

Flanking Amino Acid:
GLYSDVYKTTDPKSRLIQLK

Intron Amino Acid Position:
2066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79
0.68
1
80.7
33.7

Major BPS
91.3
1.03
0.7
79.6
35.6

Major PPT
74.3
0.55
0.9
68.2
37.6

Minor 5ss
38.7
-1.3
2.8
47.9
41.8

Minor BPS
54
0.11
1.8
66.24
40.3

Associated Gene:

Gene:
ASH1L

Ensembl Gene ID:

Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2102393 - 2152350
49958

2104173 - 2152350
48178