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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2129179_2130246_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2129179 - 2130246
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TAATCTTTACTT
Flanking Amino Acid:
LPEEEQESTKSFSETAAEPP
Intron Amino Acid Position:
2006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
74
0.6
1
65.6
41.1
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
65
0.55
1.6
77.68
39.1

Associated Gene:

Gene:
ASH1L
Ensembl Gene ID:
ENSAPLG00000013084
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019004
2102393 - 2152350
49958
ENSAPLT00000013648
2104173 - 2152350
48178