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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2144960_2151927_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2144960 - 2151927
Intron Length:
6968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTGACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTCTATTGACT
Flanking Amino Acid:
EKNEHCPSKQDPSKSYKKAG
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
74.8
0.56
0.9
71.3
39.5
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
66.2
0.59
1.6
85.79
33.5

Associated Gene:

Gene:
ASH1L
Ensembl Gene ID:
ENSAPLG00000013084
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019004
2102393 - 2152350
49958
ENSAPLT00000013648
2104173 - 2152350
48178