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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2165805_2166087_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2165805 - 2166087
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATCTAAA
5'SS Class:
major
3'SS Sequence:
AAGATTGCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCCATGCAGC
Flanking Amino Acid:
DLSEQIQFRSSSVLSQDVQI
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
66.8
40.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
60.1
0.23
1
55.7
44.7
Minor 5ss
36.3
-1.5
3.7
50.4
46.1
Minor BPS
40.7
-0.7
2.3
53.77
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020604
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037476
2165722 - 2169390
3669