About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2166164_2167775_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2166164 - 2167775
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TGCATTTTACCT
Flanking Amino Acid:
AVFYTNESDPANHTEHHEGR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
81.3
0.7
0.8
73.3
37
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
52.7
0.16
1.7
68.35
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020604
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037476
2165722 - 2169390
3669