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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2173454_2173533_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2173454 - 2173533
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGGC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCCC
U12 Branch Point Sequence:
GCGCCCTTTCCC
Flanking Amino Acid:
CVGSHWWGLQAAAPPGPAEL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
58.1
41
Major BPS
30.8
-1.2
4.2
66.7
39.9
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
29.8
-2.3
3.5
40.6
46
Minor BPS
38.5
-0.9
3.5
52.72
44.6

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629