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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2173643_2173719_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2173643 - 2173719
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGCCG
5'SS Class:
major
3'SS Sequence:
TCCCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGCCAC
U12 Branch Point Sequence:
GCGGGGCCACCC
Flanking Amino Acid:
TPRLIALELKGGVGSLGRGA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.3
48.8
47.3
Major BPS
37.9
-0.7
1.3
35.6
42.9
Major PPT
81.7
0.71
0.7
76
26
Minor 5ss
35.2
-1.7
3.5
47.9
47.8
Minor BPS
24.6
-1.9
2.2
26.98
36.3

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629