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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2173922_2174383_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2173922 - 2174383
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
GCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
CATCGCGTAATT
Flanking Amino Acid:
ASPRDRGQRMGDASSDGKSS
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
61.8
38.6
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
82.5
0.73
0.7
81.3
30.8
Minor 5ss
23.3
-3.1
3.2
25.1
38.6
Minor BPS
46.1
-0.2
2.3
66.11
44.8

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629