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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2174433_2174763_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2174433 - 2174763
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCACG
5'SS Class:
major
3'SS Sequence:
GCTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGGCTCTTCACA
Flanking Amino Acid:
GKSSSGTSLQDATSAPAQLD
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
64.1
41.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.6
0.71
0.8
72.6
37.6
Minor 5ss
40.3
-1.1
2.7
49
47
Minor BPS
54.8
0.14
1.8
65.03
41.3

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629