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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2174903_2175032_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2174903 - 2175032
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TTCTACTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
CTTTTTCTACTT
Flanking Amino Acid:
IYVIQQYNHNGESGRLEAFG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.4
41.9
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
82.8
0.74
0.7
81.2
30.4
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
48.9
0
1.9
71.16
41

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629