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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2175151_2175249_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2175151 - 2175249
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGATAT
5'SS Class:
major
3'SS Sequence:
TTGTTTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCTTGTTTTACA
Flanking Amino Acid:
FYVEECDYLQGFQVLCDLHS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
71.5
34.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
80.2
0.68
0.9
76.6
36.7
Minor 5ss
42.1
-0.9
2.9
56.5
47.8
Minor BPS
55
0.15
2.1
70.62
41.9

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629