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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2175385_2175483_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2175385 - 2175483
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GCATCTTTAAGA
Flanking Amino Acid:
GLTPVIHNMGDFQKNFYRLM
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
83.8
0.76
0.7
78
30.8
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
60.8
0.33
1.7
64.51
42.1

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629