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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2175637_2176374_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2175637 - 2176374
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACT
5'SS Class:
major
3'SS Sequence:
GTATCTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TGTCCTGTAACA
Flanking Amino Acid:
PITFPYINYDASLNYHSSAI
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
79.1
34
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
70.7
0.47
0.9
65.5
36
Minor 5ss
46.9
-0.3
2.5
65.6
38.4
Minor BPS
58.8
0.27
2
73.5
38.2

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629