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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2177217_2177298_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2177217 - 2177298
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTAA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTTGTGTAACT
Flanking Amino Acid:
YSHAVFPGAFSTFHVLEQPC
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
72.3
35.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
92
0.94
0.6
87.3
23.2
Minor 5ss
34.5
-1.8
2.9
40.7
45.6
Minor BPS
59
0.36
2.4
87.23
39

Associated Gene:

Gene:
MSTO1
Ensembl Gene ID:
ENSAPLG00000014094
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014674
2173376 - 2178004
4629