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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2181781_2181834_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2181781 - 2181834
Intron Length:
54

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAACTGC
5'SS Class:
weak_major
3'SS Sequence:
TTCTCATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTACA
Flanking Amino Acid:
SHCSSKVIQDVIIL*
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.2
50.4
41.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.7
80.2
30.7
Minor 5ss
45.5
-0.5
3
59.1
45.8
Minor BPS
62.6
0.39
1.9
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014097
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014790
2181768 - 2193285
11518