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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2183099_2183381_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2183099 - 2183381
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCCTG
5'SS Class:
major
3'SS Sequence:
TGTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CATTTATCAGCT
Flanking Amino Acid:
KEIGGQNNDKEVEWVDGMKE
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
59.7
46.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.7
0.71
0.9
72.8
42.2
Minor 5ss
34.6
-1.7
3.4
46.2
49.1
Minor BPS
46.5
-0.1
2
66.43
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014097
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014790
2181768 - 2193285
11518