About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2184568_2185139_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2184568 - 2185139
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAA
U12 Branch Point Sequence:
TTTTTTTTGATC
Flanking Amino Acid:
LPEQALECGLFEEQQAFEKS
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
55.5
0.14
1.1
47.1
37.9
Major PPT
83.7
0.76
0.9
85.7
33.5
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
74.1
0.74
1
80.38
27.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014097
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014790
2181768 - 2193285
11518