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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2190123_2192126_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2190123 - 2192126
Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
CTATTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
TTGGACTAAAAA
Flanking Amino Acid:
EEHRLPFWLKASLPSIQGEL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
79.6
0.67
0.8
78.1
30.5
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
47.3
-0.2
2
61.3
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014097
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014790
2181768 - 2193285
11518