About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2197344_2197640_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2197344 - 2197640
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CACGTGTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
MEELFETFQDEMGFSNM
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
63.1
0.3
1.1
60.8
44.4
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023622
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042941
2193624 - 2197661
4038