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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2214530_2217818_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2214530 - 2217818
Intron Length:
3289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTTTTCACA
Flanking Amino Acid:
TREILKRNIQKCISRGELQV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.3
0.91
0.6
86.8
24.1
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
62.5
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
SYT11
Ensembl Gene ID:
ENSAPLG00000014677
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015292
2209251 - 2221073
11823