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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2233630_2234426_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2233630 - 2234426
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
CATGAATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATGT
Flanking Amino Acid:
RFPEDHDPTIEDAYKIRIRI
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
66
0.36
1
57.5
41.8
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
54.7
0.23
2
80.23
41.8

Associated Gene:

Gene:
RIT1
Ensembl Gene ID:
ENSAPLG00000014743
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015372
2231623 - 2235018
3396