Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2244849_2245197_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2244849 - 2245197

Intron Length:

349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TAATTGCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ACTTCTTTAATT

Flanking Amino Acid:

LLTRGQTQDEISRLSGAAVS

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

79.4

29.7

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

72.6

0.51

0.9

66.6

Minor 5ss

46.6

-0.4

2.4

59.3

45.3

Minor BPS

79.9

1.02

85.82

34.8

Associated Gene:

Gene:

KHDC4

Ensembl Gene ID:

ENSAPLG00000014761

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024214

2236602 - 2247182

10581

ENSAPLT00000015406

2236602 - 2246871

10270